Introduction | An Example Workflow by Using Rbowtie2 | Installation | Loading | AdapterRemoval | Idetitify Adapter | Remove Adapter | Additional Arguments and Version | Bowtie2 | Build Bowtie2 Index | Additional Arguments of Bowtie Build | Bowtie2 Alignment | Additional Arguments and Version of Bowtie2 Aligner | Session Infomation | Acknowledgement | References

Starting from Scratch | Function Overview of esATAC | Introduction | Publication | Contact | Reference

What is pipeFrame | Download and Installation | Building the pipeline | Initialize | Configuration | Temporary Directory | Reference Directory | Genome Annotation | Reference Data Generation | Threads | Job Name | Step Restriction and Graph Management | Step Componentization | Non-object Function Wrapper | Class Implementation | Step Components Usage | Combine into Whole Pipeline | Session Information